Gene Array Database

Annotation of Gene Expression in the Pigment Cell

There is a rapidly growing body of literature examining gene expression on a genomic level in a variety of organisms and cells, including pigment cells. This information is scattered throughout various papers and databases. Having this information or directions to this information at a single site would be useful for our community. Pigment Cell Research is initiating this website to compile information regarding gene expression in pigment cell biology and disease.

Gene Array Thumbnail
Gene array data
stored at this site

Transcription profiling data portal

(mouse over details for further information, click Accession numbers for data)


Retinal pigment epithelia cell lines

Accession PubMed Platform
GSE741 Tian et al., 2004 GPL538
GSE10 Sharon et al., 2002 GPL4

 

Melanocyte cell cultures

Accession PubMed Platform
PLoS Ryu et al., 2007 GPL570
GSE7469 Kaufmann et al., 2007 GPL1708
U Modina Magnoni et al., 2007 GPL96
GSE6194 Whitwam et al., 2007 GPL4487
GSE4840 Hoek et al., 2006 GPL96 & GPL97
GSE4910 April & Barsh, 2006 GPL3798
GSE3142 Rendl et al., 2005 GPL339
E-MEXP-258 Boucneau et al., 2005 A-MEXP-146
GSE4570 Hoek et al., 2004 GPL96
GSE9016 Valery et al., 2001 GPL5833

 

Melanoma cell lines

Accession PubMed Platform
GSE10431* reference not yet available GPL6097
GSE10709 reference not yet available GPL570
GSE8742 reference not yet available GPL570
GSE8332 Wagner et al., 2007 GPL570
IFG UR Jaeger et al., 2007 GPL96
PLoS Ryu et al., 2007 GPL570
GSE7469 Kaufmann et al., 2007 GPL1708
GSE6817 Suryo Rahmanto et al., 2007 GPL570
GSE7153 |_
GSE7152 |		 Packer et al., 2007 GPL570
GSE7127 Johansson et al., 2007 GPL570
GSE5949 |_
GSE5720 |		 Shankavaram et al., 2007 GPL91, GPL92, GPL93, GPL94, GPL95
GPL96 & GPL97
GSE5665* Bhati et al., 2007 GPL887
GSE9118 Muthusamy et al., 2006 GPL96
GSE2715 Hao et al., 2006 GPL96
GSE4819 Vignejevic et al., 2006 GPL339
GSE4845 Hoek et al., 2006 GPL96, GPL97 & GPL570
GSE2584* Hernandez-Vargas et al., 2006 GPL1998 & GPL1999
GSE3484 Cozzi et al., 2006 GPL2992
GSE1845 Okamoto et al., 2005 GPL96
GSE1793 |_
GSE1792 |		 Gallagher et al., 2005 GPL80
E-MEXP-247 Diarra-Mehrpour et al., 2004 A-AGIL-14
GSE1562 Jamshidi-Parsian et al., 2004 GPL91
GSE4570 |_
GSE4576 |		 Hoek et al., 2004 GPL96
UPenn Tsavachidou et al., 2004 GPL96
GSE918 Schadt et al., 2004 GPL740 etc.
GSE740 Johnson et al., 2003 GPL543 etc.
GSE59 Ross et al., 2000 GPL167 & GPL169
GSE2003 Weinstein et al., 2000 GPL1290
GSE1 Bittner et al., 2000 GPL7
* Breast cancer MDA-MB-435 has been identified as melanoma line M14 (Rae et al., 2006) - light grey highlights above.

 

Tissue samples

Accession PubMed Platform
GSE8541 reference not yet available GPL2872
GSE8615 reference not yet available GPL570
GSE8401 reference not yet available GPL96
GSE7956 reference not yet available GPL96
GSE7929 reference not yet available GPL96
GSE7307 reference not yet available GPL570
GSE7778 April & Barsh, 2007 GPL3119
GSE4910 April & Barsh, 2006 GPL3798
GSE2503 Nindl et al., 2006 GPL96
E-TABM-1 |
E-TABM-2 |_
E-TABM-3 |
E-TABM-4 |		 Winnepenninckx et al., 2006 A-AGIL-11
GSE4587 Smith et al., 2005 GPL570
GSE3189 Talantov et al., 2005 GPL96
GSE2564 Lu et al., 2005 GPL1986 & GPL1987
GSE1755 Harvell et al., 2004 GPL1448

 

Comparative genomic hybridization data portal

(mouse over details for further information, click Accession numbers for data)
 

Accession PubMed Platform
GSE7822 Reference not yet available GPL2004 GPL2005 GPL2879 GPL3718 GPL3720 GPL4091 GPL5144 GPL5149
GSE9003 Stark & Hayward, 2007 GPL5711
GSE7692 Greshock et al., 2007 GPL4894
GSE7606 Maser et al., 2007 GPL887
GSE6779 Jonsson et al., 2007 GPL4723
GSE4747 Curtin et al., 2006 GPL2024
E-TABM-65 Bussey et al., 2006 A-MEXP-285
GSE2520* Garraway et al., 2005 GPL2014 & GPL2015
GSE2631 Curtin et al., 2005 GPL2024
GSE1755 Harvell et al., 2004 GPL1448

* Breast cancer MDA-MB-435 has been identified as melanoma line M14 (Rae et al., 2006) - light grey highlights above.  

 

Protein array data portal

(mouse over details for further information, click Accession numbers for data)
 

Accession PubMed Platform
GSE5501 Nishizuka et al., 2003 GPL4081

 

§ Link updates by Keith Hoek - April 25, 2008.

top
Blackwell SynergyBlackwell Publishing

Blackwell Publishing